unzhakov
5c2b12c0e6
- Fix chi2 calculation bug in calibration.py (remove incorrect coeffs[::-1] reversal in np.polyval) - Fix broken beta_spectrum/cli.py (remove orphaned detector response add_argument calls and unused imports) - Add ExpSpectrum.apply_calibration() and EnergyCalibrator.from_am241_spectrum() - Add LivetimeDetermination class for pulser-based livetime - Add SpectrumPipeline orchestration (read→subtract→calibrate→livetime→validate) - Add ROOT I/O with PyROOT primary + uproot fallback - Add bs_exp CLI with process, livetime, export subcommands - Add exp_calibration notebook with pre-calibration visualization - Add comprehensive tests (73 passing) - Add bs_exp console script and [root] extra to pyproject.toml - Remove obsolete detector_response module and unused notebooks
75 lines
1.7 KiB
TOML
75 lines
1.7 KiB
TOML
[build-system]
|
|
requires = ["setuptools>=61.0"]
|
|
build-backend = "setuptools.build_meta"
|
|
|
|
[project]
|
|
name = "beta-spectrum"
|
|
version = "0.4.0"
|
|
description = "High-precision beta spectrum calculation for nuclear physics"
|
|
authors = [
|
|
{ name = "Evgeniy Unzhakov" }
|
|
]
|
|
requires-python = ">=3.10"
|
|
|
|
dependencies = [
|
|
"numpy",
|
|
"scipy",
|
|
"matplotlib",
|
|
"pandas",
|
|
"nbformat>=5.10.4",
|
|
"nbconvert>=7.17.1",
|
|
]
|
|
|
|
[project.optional-dependencies]
|
|
ensdf = ["paceENSDF"]
|
|
root = ["root"] # PyROOT (requires system ROOT installation)
|
|
dev = [
|
|
"pytest",
|
|
"nbmake",
|
|
"black",
|
|
"ruff",
|
|
"mypy",
|
|
"mdformat",
|
|
"mdformat-frontmatter",
|
|
"mdformat-footnote",
|
|
"mdformat-tables"
|
|
]
|
|
|
|
[project.scripts]
|
|
bs_pnpi = "beta_spectrum.cli:main"
|
|
bs_exp = "exp_data.exp_cli:main"
|
|
|
|
[tool.setuptools.packages.find]
|
|
where = ["."]
|
|
|
|
[tool.mypy]
|
|
python_version = "3.10"
|
|
strict = true
|
|
exclude = ["notebooks", "scripts/notebook_plots.py", "tests/"]
|
|
disable_error_code = ["no-untyped-def", "arg-type", "return-value", "assignment", "misc", "import-untyped", "type-arg", "no-any-return", "union-attr", "operator"]
|
|
|
|
[tool.black]
|
|
line-length = 88
|
|
|
|
[tool.pytest.ini_options]
|
|
testpaths = ["tests", "notebooks"]
|
|
markers = [
|
|
"property: Physics property tests (positivity, monotonicity, limits)",
|
|
"physics: Physics behavior tests (energy dependence, Z dependence)",
|
|
"api: API contract tests (signatures, return types, error handling)",
|
|
"quality: Code quality tests (shape, type, NaN, stability)",
|
|
"integration: Full pipeline integration tests",
|
|
"slow: Tests that take >1s to run",
|
|
"requires_ensdf: Tests requiring paceENSDF package",
|
|
]
|
|
timeout = 30
|
|
timeout_method = "thread"
|
|
|
|
[tool.ruff]
|
|
line-length = 88
|
|
|
|
[tool.mdformat]
|
|
line-length = 88
|
|
wrap = false
|
|
number = true
|