Separate monolithic beta_spectrum package into:
beta_spectrum — pure theory (components, spectrum, CLI, visualize)
exp_data — experimental data handling (spectrum, calibration,
fitters, corrections)
fitter — analysis framework (model, fit_engine, extractor,
result)
beta_spectrum.visualize — plotting (BetaSpectrumAnalyzer)
Phase 1 — exp_data module:
ExpSpectrum dataclass with metadata, normalization, serialization
EnergyCalibrator (linear/quadratic calibration)
GaussianFitter + PeakFitter for calibration sources
DeadTimeCorrection, PileUpCorrection, BackgroundSubtractor
43 new tests, ruff + mypy clean
Phase 2 — fitter module:
SpectrumModel wraps BetaSpectrum + DetectorResponse with convolution
SpectrumFitter with χ² minimization, covariance, profile likelihood,
confidence intervals, robust loss functions
CWExtractor + GVAExtractor for C(W) and g_V/g_A extraction
AnalysisResult + FitSummary for physics-specific results
CurveFitter general-purpose callable model fitter
34 new tests, ruff + mypy clean
Phase 3 — clean up beta_spectrum:
Remove cw_extractor.py and fitter.py (moved to fitter/)
Clean __init__.py to export only theory classes
Add backward-compat methods to CWExtractor
Fix BetaSpectrumAnalyzer._get_branch_spectrum returning BetaSpectrum
objects instead of numpy arrays (plot fix)
Phase 4 — package structure:
Auto-discovered by setuptools (4 packages)
All imports updated across 26 source files
Black formatting applied
322 tests pass (262 original + 60 new)
ruff + mypy clean on all source files
Bug fixes:
- Fix multi-branch spectrum plotting: universal component keys
(Fermi, Screening, etc.) don't have per-branch prefix; fixed
fallback lookup.
- Fix negative phase space beyond endpoint: BetaSpectrum returns
negative values for W > W0; clamp branch spectra to zero.
162 lines
4.6 KiB
Python
162 lines
4.6 KiB
Python
"""Tests for fitter.extractor."""
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import numpy as np
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from fitter.extractor import (
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CWExtractor,
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GVAExtractor,
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CWExtractionResult,
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GVAExtractionResult,
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)
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class TestCWExtractor:
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"""Test CWExtractor."""
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def test_extract(self):
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from beta_spectrum import SpectrumConfig
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config = SpectrumConfig(
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Z_parent=43,
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Z_daughter=44,
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A_number=99,
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endpoint_MeV=0.294,
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)
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extractor = CWExtractor(config)
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energies_keV = np.linspace(0.01, 0.29, 50)
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measured = np.linspace(10.0, 0.1, 50)
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errors = np.sqrt(measured)
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model = np.linspace(9.5, 0.09, 50)
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result = extractor.extract(
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measured_counts=measured,
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measured_errors=errors,
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energies_keV=energies_keV,
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model_counts=model,
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endpoint_keV=294.0,
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)
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assert isinstance(result, CWExtractionResult)
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assert len(result.cw_values) == 50
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assert len(result.energies_keV) == 50
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assert np.isclose(result.endpoint_keV, 294.0)
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assert np.all(np.isfinite(result.cw_values))
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def test_extract_with_zero_model(self):
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from beta_spectrum import SpectrumConfig
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config = SpectrumConfig(
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Z_parent=43,
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Z_daughter=44,
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A_number=99,
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endpoint_MeV=0.294,
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)
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extractor = CWExtractor(config)
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energies_keV = np.linspace(0.01, 0.29, 50)
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measured = np.ones(50) * 5.0
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errors = np.ones(50) * 2.0
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model = np.zeros(50) # All zeros
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result = extractor.extract(
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measured_counts=measured,
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measured_errors=errors,
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energies_keV=energies_keV,
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model_counts=model,
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endpoint_keV=294.0,
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)
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# C(W) should be 1.0 where model is zero (default)
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assert np.all(result.cw_values == 1.0)
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class TestGVAExtractor:
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"""Test GVAExtractor."""
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def test_extract_from_curve_basic(self):
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energies_W = np.linspace(1.1, 1.57, 100)
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endpoint_W = 1.575 # ~294 keV
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cw_values = np.ones_like(energies_W) # C(W) = 1 for allowed
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result = GVAExtractor.extract_from_curve(
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cw_values=cw_values,
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energies_W=energies_W,
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endpoint_W=endpoint_W,
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)
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assert isinstance(result, GVAExtractionResult)
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assert np.isclose(result.gv_eff, 1.0)
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assert result.chi2_per_dof >= 0
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def test_extract_from_curve_with_slope(self):
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energies_W = np.linspace(1.1, 1.57, 100)
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endpoint_W = 1.575
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# C(W) with slight slope
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cw_values = 1.0 + 0.1 * (energies_W - endpoint_W)
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result = GVAExtractor.extract_from_curve(
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cw_values=cw_values,
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energies_W=energies_W,
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endpoint_W=endpoint_W,
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)
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assert isinstance(result, GVAExtractionResult)
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# g_A should be non-zero due to slope
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assert abs(result.ga_eff) > 0
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def test_extract_from_curve_insufficient_data(self):
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energies_W = np.array([1.0, 1.5])
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endpoint_W = 1.575
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cw_values = np.array([1.0, 1.0])
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result = GVAExtractor.extract_from_curve(
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cw_values=cw_values,
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energies_W=energies_W,
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endpoint_W=endpoint_W,
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)
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assert isinstance(result, GVAExtractionResult)
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assert result.chi2_per_dof == 0.0
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def test_gva_summary(self):
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result = GVAExtractionResult(
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gv_eff=1.0,
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gv_error=0.01,
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ga_eff=0.5,
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ga_error=0.02,
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correlation=-0.3,
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chi2_per_dof=1.2,
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)
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summary = result.summary()
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assert "g_V" in summary
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assert "g_A" in summary
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assert "1.0" in summary
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assert "0.5" in summary
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assert "1.2" in summary
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class TestCWExtractionResult:
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"""Test CWExtractionResult methods."""
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def test_kurie_plot(self):
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energies_W = np.linspace(1.1, 1.57, 100)
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endpoint_W = 1.575
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result = CWExtractionResult(
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energies_W=energies_W,
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energies_keV=energies_W * 510.998950 - 510.998950,
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cw_values=np.ones_like(energies_W),
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cw_errors=np.zeros_like(energies_W),
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flux=np.ones_like(energies_W) * 10.0,
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flux_errors=np.ones_like(energies_W) * 3.0,
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endpoint_W=endpoint_W,
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endpoint_keV=294.0,
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)
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E_keV, kurie = result.kurie_plot()
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assert len(E_keV) > 0
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assert len(kurie) > 0
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assert np.all(np.isfinite(kurie))
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assert np.all(kurie >= 0)
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