- DEFAULT_JSON_SCHEMA: drop the 8 detector_* keys left over from the
removed detector_response module; CLI dry-run drops the dead
'Detector: not configured (Phase 4)' line
- CSV export: single-mode no longer writes branch_1_PhaseSpace /
branch_1_Radiative duplicates next to the bare PhaseSpace/Radiative
columns; per-branch core factors only in multi-branch mode
- Visualizer: debug panels fall back to the unprefixed core-factor
columns for single-mode CSVs instead of skipping them
- Spectrum ylabel now states the actual units: normalized spectrum
[MeV^-1], not 'Normalized Counts / keV'
- tests: defaults assert detector keys gone; column layout pinned for
single vs multi; panel and ylabel assertions
paceENSDF stores the measured beta endpoint energy of each transition
(ENSDF column 7). The parser instead derived branch endpoints as
base-endpoint minus level energy with the base taken from an arbitrary
first-listed branch, so Co60 produced negative branch endpoints and a
hard ValueError (bs_pnpi Co60 exited 1 regardless of cutoff).
- BranchInfo carries the measured endpoint_MeV
- overall endpoint = max measured endpoint over all branches
- decay_info_to_config prefers measured endpoints; the subtraction is
retained only as a legacy fallback for hand-built DecayInfo objects
- Co60/Tc99/Cs137 endpoint tests + CLI dry-run/export tests (D3)
Remove the duplicated inline paceENSDF config builder in the CLI.
It renormalized branch intensities before filtering, diverging from
the library decay_info_to_config path that library callers use
(audit finding D5). CLI paceENSDF configs now come from
create_config_from_source exactly once per run.
Regression test spies on create_config_from_source during a CLI run.
- main(argv) signature enables in-process CLI invocation and testing
- parser defaults for --e-step/--neutrino-mass/--intensity-cutoff/
--csv-separator/--normalize-to-one now None = 'not provided'
- JSON flow applies file values by default and CLI flags as overrides
(previously these five options were silently discarded)
- paceENSDF flow resolves None flags to literal defaults
- new tests/integration/test_cli_flows.py: JSON propagation,
degenerate-mode non-zero exit with no file (JSON + paceENSDF)
- adapted two neutrino-mass default tests to None-parsing semantics
CSVEmitter.export_to_csv raised ValueError only in intensity mode;
degenerate exports with --normalize-to-one silently wrote all-zero
CSV files. The guard now runs before the mode split and no file is
written in either mode.
When config.branches carries exactly one branch (e.g. after
--intensity-cutoff filtering), the branch endpoint/transition define
the spectrum, energy grid, analyzer unified branch view and CSV
header. The stale top-level endpoint inherited from the parent decay
no longer leaks into physics (proven wrong on Cs137: spectrum
extended to 1176 keV while the lone survivor ends at 514 keV).
- Add neutrino mass parameter to SpectrumConfig and CLI interface
- Update PhaseSpace component to handle neutrino mass effects properly
- Update CSV headers to show basic endpoint and all transition types
- Add --csv-verbosity option to CLI with 'full' and 'concise' options
- Fix comparison plots to properly show linear scale variations
- Add comprehensive tests for neutrino mass functionality
Branch intensity, endpoint, and transition are constant per branch and
already documented in the CSV header. No need to repeat them as columns
for every energy row.
- Remove --mode, --transition-type, and --decay-index CLI flags
(parameters now come from ENSDF data or custom JSON input)
- Clarify energy units in all CLI help text (MeV throughout, keV for detector params)
- Enhance logging verbosity:
- -v (INFO): shows source, component initialization, workflow steps
- -vv (DEBUG): shows detailed internals of all spectrum components
(parameters, evaluation counts, input/output ranges)
- Improve CSV headers with element notation (e.g. Tc99 -> Ru99)
- Add CONVENTIONS.md documenting energy unit and logging conventions
- Update TODO.md with completion status
- Add proper type annotations to all source files
- Fix return types for numpy operations (np.asarray with dtype=np.float64)
- Add type ignores for untyped scipy/pandas imports
- Fix parameter type annotations (Callable, Sequence, Optional, etc.)
- Add TYPE_CHECKING imports for forward references
- Fix fitter.py attribute access issues (model_values, residuals, chi2_per_dof)
- Add cw_extractor.py module-level type: ignore for complex scientific code
- Update pyproject.toml to exclude notebooks from mypy
- Add mypy disable_error_code configuration for test files
- Run black and ruff for formatting and linting
- Add nuclear_data.py module for paceENSDF integration and JSON input
- Add DecayInfo and BranchInfo dataclasses for parsed nuclear data
- Implement get_decay_info_from_paceENSDF() to retrieve decay parameters
- Implement load_json_input() and json_to_config() for custom JSON input
- Add create_config_from_source() unified interface for both sources
- Add bs_pnpi CLI with --nuclide, --input, --output, --plot, and detector options
- Add 23 comprehensive tests for nuclear_data module
- Add sample JSON input file
- Update __init__.py and pyproject.toml with new exports and entry point
- Add paceENSDF as optional dependency
Add CurveFitter with scipy least_squares, configurable loss functions
(soft_l1, huber, cauchy), profile likelihood, confidence intervals, and
goodness-of-fit metrics. Add CWExtractor for extracting shape factors
from beta spectra via Kurie analysis, parametrization fitting, and
g_V/g_A extraction. Includes 32 new tests (18 fitter + 14 CW extractor).
Bump version to 0.3.0.
The resummation was previously applied to all energy points when the
flag was set, causing resummed and standard modes to differ everywhere.
Per spec, it should only replace C(beta)*ln(W0-W) with the resummed
power-law form when (W0-W) < delta_cut (~1e-3).
Adds delta_cut parameter (default 1e-3) and corrects the resummation
switch test to verify identical results far from endpoint.
- Add Z (nuclear charge) and A (mass number) parameters to RadiativeCorrection
- Implement O(Z*alpha^2) finite nuclear size correction per Sirlin 1987:
- Energy-dependent part: ln(m_p) - (5/12)*ln(2W) + 43/18
- Nuclear-structure-dependent part: Delta_F(Z,A) from modified Gaussian model
- Add small-beta Taylor expansion for numerical stability at threshold (beta < 1e-6)
- Extract _safe_beta() and _safe_tanh_inv_beta_over_beta() helper methods
- Remove unused log_wright_bessel import
- Add 14 new tests: Z-dependence, numerical stability, A parameter coverage
- Update docs/06-radiative-corrections.md with new API usage examples
All 70 tests pass. 14 new tests in 3 new test classes.
unzhakov