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beta_shape_pnpi/AGENTS.md
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2.5 KiB

Agent Instructions — beta-spectrum

High-precision beta decay spectrum calculator. Extracts shape factor C(W) from ⁹⁹Tc beta spectrum to parametrize g_V coupling.

Stack & Commands

pytest                           # all tests
nbmake notebooks/                # execute notebooks as tests
black --check .                  # formatting
ruff check .                     # linting
mypy .                           # type checking (strict)
bs_pnpi --nuclide Tc99 -vv --output ./output/verification.csv  # debug verification

Install: source ~/.pyenv/sci/bin/activate && pip install -e ".[dev]"

Git Workflow (GitHub Flow)

  • Never commit directly to main. Always branch: git checkout -b dev/<short-desc>
  • Atomic commits with Conventional Commits format:
    • feat:, fix:, docs:, style:, refactor:, perf:, test:, chore:
    • Imperative mood, present tense, under 72 chars
    • WIP commits fine on dev branches — squash before final merge
  • Commit each logical change — don't wait for green. Use git add -p.
  • Rebase over merge for linear history: git rebase main before merge.
  • Delete branch locally + remotely after merge.

TDD

Test-first by default. For new classes/functions: write failing test first.

  • RED — failing test defining desired behavior
  • GREEN — minimal code to pass
  • REFACTOR — clean up, confirm tests still pass

State which phase you're in. Name phases explicitly.

Python Testing Conventions

  • Tests mirror package structure: beta_spectrum/components/foo.py → tests/physics/test_foo.py
  • Shared fixtures in tests/conftest.py
  • Classes organized by feature area (e.g., TestComponentBasicProperties)
  • Descriptive names: test_<function>_<expected_behavior>_<context>
  • Include implementation-level assertions (type checks, pre/postconditions)
  • Use hypothesis for property-based tests where applicable
  • Physics tests verify: physical constraints at thresholds, positivity, monotonicity, numerical stability

Quality Gates

All must pass before merge:

pytest
nbmake notebooks/
black --check .
ruff check .
mypy .

Run individually to identify failures.

Debug Verification (Final Step)

After quality gates pass, run:

bs_pnpi --nuclide Tc99 -vv --output ./output/verification.csv --plot ./output/verification.png --log-file ./output/debug.log 2>&1 | tee ./output/debug_stdout.log

Verify parameter consistency across all components. Save artifacts to ./output/.