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7e31ac4b4e6f8cb0c313fcee5f36b8e5c2b5cd36
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17 Commits
Author SHA1 Message Date
unzhakov 7e31ac4b4e docs: reflect normalization fixes, detector cleanup and CLI overrides 
- README: remove stale detector_response.py tree entry and the
  detector-models highlight (module removed); document per-branch
  measured transition endpoints from paceENSDF and JSON-flow CLI
  override semantics
- TODO: drop the DEFAULT_JSON_SCHEMA detector-keys clause (removed)
- data/custom_input_example.json: strip dead detector_* keys
 2026-10-02 12:01:45 +03:00
unzhakov 40d0836056 docs: document core spectrum, physical branch columns, CSV-driven plots 2026-09-30 03:11:05 +03:00
unzhakov be3e288e0d docs: update documentation files and fix linting issues 2026-07-07 13:32:48 +03:00
unzhakov 38b44b56e6 feat: v0.4.0 package restructuring — split into 4 modules 
Separate monolithic beta_spectrum package into:
  beta_spectrum   — pure theory (components, spectrum, CLI, visualize)
  exp_data        — experimental data handling (spectrum, calibration,
                    fitters, corrections)
  fitter          — analysis framework (model, fit_engine, extractor,
                    result)
  beta_spectrum.visualize — plotting (BetaSpectrumAnalyzer)

Phase 1 — exp_data module:
  ExpSpectrum dataclass with metadata, normalization, serialization
  EnergyCalibrator (linear/quadratic calibration)
  GaussianFitter + PeakFitter for calibration sources
  DeadTimeCorrection, PileUpCorrection, BackgroundSubtractor
  43 new tests, ruff + mypy clean

Phase 2 — fitter module:
  SpectrumModel wraps BetaSpectrum + DetectorResponse with convolution
  SpectrumFitter with χ² minimization, covariance, profile likelihood,
  confidence intervals, robust loss functions
  CWExtractor + GVAExtractor for C(W) and g_V/g_A extraction
  AnalysisResult + FitSummary for physics-specific results
  CurveFitter general-purpose callable model fitter
  34 new tests, ruff + mypy clean

Phase 3 — clean up beta_spectrum:
  Remove cw_extractor.py and fitter.py (moved to fitter/)
  Clean __init__.py to export only theory classes
  Add backward-compat methods to CWExtractor
  Fix BetaSpectrumAnalyzer._get_branch_spectrum returning BetaSpectrum
  objects instead of numpy arrays (plot fix)

Phase 4 — package structure:
  Auto-discovered by setuptools (4 packages)
  All imports updated across 26 source files
  Black formatting applied
  322 tests pass (262 original + 60 new)
  ruff + mypy clean on all source files

Bug fixes:
  - Fix multi-branch spectrum plotting: universal component keys
    (Fermi, Screening, etc.) don't have per-branch prefix; fixed
    fallback lookup.
  - Fix negative phase space beyond endpoint: BetaSpectrum returns
    negative values for W > W0; clamp branch spectra to zero.
 2026-05-17 18:58:04 +03:00
unzhakov 8314cee29c refactor: restructure metadata files for context efficiency 
- Shrink global AGENTS.md: 153 → 56 lines (−63%)
  Removed: git workflow, TDD, overthinking guards, code style, reasoning protocol
  Kept: personality, git basics, thinking levels, general principles, backend
- Create project AGENTS.md: 71 lines
  Added: stack/commands, GitHub Flow git workflow, Conventional Commits,
  TDD (Python-specific), quality gates, debug verification
- Trim CONVENTIONS.md: 161 → 68 lines (−58%)
  Removed: verbose examples, redundant unit convention section,
  lengthy SpectrumComponent code example
- Delete DEVELOPMENT.md: 238 lines → 0 (migrated to AGENTS.md)
  Setup/release checklist removed (not agent concerns)
  Git workflow, TDD, quality gates, notebook QC, debug verification
  all migrated to AGENTS.md
- Update README.md project structure
Total per-session metadata: 552 → 195 lines (−65%)
 2026-05-16 19:51:37 +03:00
unzhakov 1a23283cf1 fix: decay_info_to_config() now passes branches to SpectrumConfig; update docs for paceENSDF completion 
- Fixed bug: decay_info_to_config() was dropping branches, causing
  create_config_from_source('paceENSDF') to return single-branch config
- Added BranchConfig import to nuclear_data.py
- Marked B1 (paceENSDF integration) as complete in TODO.md
- Updated README.md with paceENSDF details in Implementation Status
- Updated TODO.md Current Status with v0.3.1 notes
 2026-05-16 18:50:06 +03:00
unzhakov ef337073d6 docs: update TODO and README for B3 completion and BranchConfig export 
- Cross out B3 in TODO.md with completion details
- Export BranchConfig in __init__.py public API
- Update README to mention per-branch transition types and intensity cutoff
 2026-05-08 08:35:01 +03:00
unzhakov 4a3d31de83 Update docs and TODOs for CLI & plot improvements 
- README.md: Add features for plot modes, traceability, debug workflow
- README.md: Update BetaSpectrumAnalyzer docs with show_components param
- README.md: Update Quick Start with both plot modes
- README.md: Add output/ to project structure
- TODO.md: Mark B8.4 plot output as completed
- TODO.md: Update Current Status with B8.4
 2026-05-05 14:35:11 +03:00
unzhakov 0b5fe88f7b docs: remove stale checkboxes, consolidate README vs TODO 
- TODO.md: cross out completed A2 (detector response) and A4 (fitter/CW extraction) items with strikethrough and implementation notes
- README.md: replace redundant Components and Additional Modules tables with Implementation Status section referencing TODO.md
- Eliminates duplicate status tracking between README and TODO
 2026-05-04 16:01:54 +03:00
unzhakov 1a0754be5f docs: remove empty recoil.py stub, update README and TODO to reflect actual state 
- Remove empty beta_spectrum/components/recoil.py (0-line stub)
- Remove recoil.py from README.md project tree and components table
- Update TODO.md: replace specific recoil section with generic 'Additional
  Corrections' deferred item, update Current Status to 0.3.0 with actual
  implementation list, mark A4 as complete, set A3 as next step
 2026-05-04 11:56:41 +03:00
unzhakov d8c521f6f8 docs: update README with CLI, nuclear data integration, and additional modules 2026-05-02 22:23:37 +03:00
unzhakov b974b68ce7 docs: update README structure and DEVELOPMENT.md setup instructions 2026-05-01 19:17:41 +03:00
unzhakov c40a6f7700 Update description and docs 
Phase space upgrad (forbidden factors)
 2026-04-29 22:35:56 +03:00
unzhakov 8dac095d33 Add Obsidian knowledge base (docs/) and update README with docs structure 2026-04-26 22:41:42 +03:00
Evgeniy Unzhakov d8804421cc Update README.md 
Remove notebooks/ dir description (it is no longer tracked)
 2026-04-17 15:43:12 +03:00
unzhakov 052a01980a Initial README 
To be edited
 2026-04-17 15:27:26 +03:00
unzhakov a5e1962fe2 Initial commit 
Base modular structure (phase space, Fermi function)
Initial .gitignore
 2026-04-02 15:38:37 +03:00