Detector data handling, energy calibration, peak fitting and
instrumental corrections leave the project scope (theory-only
spectrum shape calculation). Removes the package, its tests, the
exp pipeline integration test, the calibration notebook, and the
ExpSpectrum fixtures from the shared conftest.
- Use find_peaks width=(5,50) to reject noise bumps
- Simplify peak matching: find two strongest peaks with largest
channel separation, assign min/max known energies
- Require absolute threshold of 400 counts to avoid noise peaks
- Calibration now correctly maps: ch 97→13.0 keV, ch 537→59.54 keV
- Tc-99 endpoint at ch 2750 → 293.6 keV (expected ~294)
- Add .rpiv/ to .gitignore
- Search full spectrum (exclude pulser region) instead of just low-energy
- Include 59.54 keV line in known Am-241 energies
- Brute-force peak-to-energy matching with physical gain constraint
(3-40 ch/keV) to reject spurious fits
- Fixed find_peaks parameters: height=100, distance=5 for accurate
peak detection
- Calibration now correctly maps: ch 97→13 keV, ch 134→17.4 keV,
ch 537→59.6 keV, giving Tc-99 endpoint at ch 2750→291.6 keV
- Add .rpiv/ to .gitignore
- Remove --mode, --transition-type, and --decay-index CLI flags
(parameters now come from ENSDF data or custom JSON input)
- Clarify energy units in all CLI help text (MeV throughout, keV for detector params)
- Enhance logging verbosity:
- -v (INFO): shows source, component initialization, workflow steps
- -vv (DEBUG): shows detailed internals of all spectrum components
(parameters, evaluation counts, input/output ranges)
- Improve CSV headers with element notation (e.g. Tc99 -> Ru99)
- Add CONVENTIONS.md documenting energy unit and logging conventions
- Update TODO.md with completion status
- Add proper type annotations to all source files
- Fix return types for numpy operations (np.asarray with dtype=np.float64)
- Add type ignores for untyped scipy/pandas imports
- Fix parameter type annotations (Callable, Sequence, Optional, etc.)
- Add TYPE_CHECKING imports for forward references
- Fix fitter.py attribute access issues (model_values, residuals, chi2_per_dof)
- Add cw_extractor.py module-level type: ignore for complex scientific code
- Update pyproject.toml to exclude notebooks from mypy
- Run black and ruff for formatting and linting
Implemented all planned corrections:
- finite-size e/m L0 and U
- atomic screening and exchange
- radiative (electron only so far)
Added plotter and csv_export
Add implementation for the basic set of spectrum components:
Primary
-------
- Phase Space
- Fermi Function
Corrections
-----------
- Atomic:
- Screening
- Atomic exchange
- E/M and finite size:
- Finite nucleus size and charge distribution
- Radiative
unzhakov