11 Commits
Author SHA1 Message Date
unzhakov 67de4e3baa style: canonicalize black formatting on test files 2026-10-03 01:31:35 +03:00
unzhakov 7f47a876ae style: apply black formatting to test files 2026-10-02 14:32:04 +03:00
unzhakov 8172ba2541 test: adapt existing suites to unconditional core, drop dead detector tests 2026-09-30 03:08:13 +03:00
unzhakov be3e288e0d docs: update documentation files and fix linting issues 2026-07-07 13:32:48 +03:00
unzhakov 9bf1e1333e refactor: rename visualize module to output module and separate concerns into core, csv_export, and visualization modules 2026-07-07 12:59:11 +03:00
unzhakov 6dc1e3924d feat: add CLI options for custom CSV separator and normalize-to-one branch normalization 2026-07-06 17:32:56 +03:00
unzhakov 1b4d418b5f feat: change CSV output format to use tab delimiters instead of comma delimiters 2026-07-03 18:01:39 +03:00
unzhakov c2795bf86e fix: use underscores in branch names for CSV headers 2026-07-03 15:10:10 +03:00
unzhakov a7eef7bc20 feat: polish CSV header format with improved metadata and column naming 2026-07-03 14:58:19 +03:00
unzhakov 38b44b56e6 feat: v0.4.0 package restructuring — split into 4 modules
Separate monolithic beta_spectrum package into:
  beta_spectrum   — pure theory (components, spectrum, CLI, visualize)
  exp_data        — experimental data handling (spectrum, calibration,
                    fitters, corrections)
  fitter          — analysis framework (model, fit_engine, extractor,
                    result)
  beta_spectrum.visualize — plotting (BetaSpectrumAnalyzer)

Phase 1 — exp_data module:
  ExpSpectrum dataclass with metadata, normalization, serialization
  EnergyCalibrator (linear/quadratic calibration)
  GaussianFitter + PeakFitter for calibration sources
  DeadTimeCorrection, PileUpCorrection, BackgroundSubtractor
  43 new tests, ruff + mypy clean

Phase 2 — fitter module:
  SpectrumModel wraps BetaSpectrum + DetectorResponse with convolution
  SpectrumFitter with χ² minimization, covariance, profile likelihood,
  confidence intervals, robust loss functions
  CWExtractor + GVAExtractor for C(W) and g_V/g_A extraction
  AnalysisResult + FitSummary for physics-specific results
  CurveFitter general-purpose callable model fitter
  34 new tests, ruff + mypy clean

Phase 3 — clean up beta_spectrum:
  Remove cw_extractor.py and fitter.py (moved to fitter/)
  Clean __init__.py to export only theory classes
  Add backward-compat methods to CWExtractor
  Fix BetaSpectrumAnalyzer._get_branch_spectrum returning BetaSpectrum
  objects instead of numpy arrays (plot fix)

Phase 4 — package structure:
  Auto-discovered by setuptools (4 packages)
  All imports updated across 26 source files
  Black formatting applied
  322 tests pass (262 original + 60 new)
  ruff + mypy clean on all source files

Bug fixes:
  - Fix multi-branch spectrum plotting: universal component keys
    (Fermi, Screening, etc.) don't have per-branch prefix; fixed
    fallback lookup.
  - Fix negative phase space beyond endpoint: BetaSpectrum returns
    negative values for W > W0; clamp branch spectra to zero.
2026-05-17 18:58:04 +03:00
unzhakov c78d0655a0 test: complete migration to structured test suite
Phase 1: Removed 6 duplicate old test files (fermi, finite_size, screening,
exchange, radiative, phase_space) — their tests are now in physics/ and quality/
using shared helpers from common/.

Phase 2: Migrated remaining 7 old test files:
- test_spectrum.py → integration/test_spectrum_pipeline.py (integration tests)
- test_fitter.py → physics/test_fitter.py (fit quality tests)
- test_cw_extractor.py → physics/test_cw_extractor.py (extraction accuracy)
- test_multi_branch.py → physics/test_multi_branch.py (branching physics)
- test_detector_response.py → physics/ + quality/ (split into physics + API)
- test_nuclear_data.py → quality/test_nuclear_data.py (parsing/API)
- test_logging_utils.py → quality/test_logging_utils.py (API tests)

Removed 12 old flat files, created 4 new files.
Total: 251 tests passing (6 skipped), down from 230 → 251 (net +21
from better coverage, not duplicates).

Test structure:
- tests/common/ — shared property/API helpers (eliminates ~18 duplicates)
- tests/physics/ — 10 files, unique physics behavior tests
- tests/quality/ — 8 files, API contract + parsing tests
- tests/integration/ — 1 file, end-to-end pipeline tests
2026-05-15 15:52:50 +03:00