refactor: rename visualize module to output module and separate concerns into core, csv_export, and visualization modules
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@@ -87,10 +87,12 @@ class SpectrumConfig:
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intensity_cutoff: float = (
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0.0 # Ignore branches below this fraction (default: 0.0 = all)
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)
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# CSV output options
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csv_separator: str = ',' # Default separator for CSV output
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normalize_to_one: bool = False # If True, normalize each branch to 1, ignoring intensity
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csv_separator: str = "," # Default separator for CSV output
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normalize_to_one: bool = (
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False # If True, normalize each branch to 1, ignoring intensity
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)
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class BetaSpectrum:
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