feat: experimental data calibration pipeline with ROOT I/O
- Fix chi2 calculation bug in calibration.py (remove incorrect coeffs[::-1] reversal in np.polyval) - Fix broken beta_spectrum/cli.py (remove orphaned detector response add_argument calls and unused imports) - Add ExpSpectrum.apply_calibration() and EnergyCalibrator.from_am241_spectrum() - Add LivetimeDetermination class for pulser-based livetime - Add SpectrumPipeline orchestration (read→subtract→calibrate→livetime→validate) - Add ROOT I/O with PyROOT primary + uproot fallback - Add bs_exp CLI with process, livetime, export subcommands - Add exp_calibration notebook with pre-calibration visualization - Add comprehensive tests (73 passing) - Add bs_exp console script and [root] extra to pyproject.toml - Remove obsolete detector_response module and unused notebooks
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@@ -9,7 +9,7 @@ work together correctly.
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import numpy as np
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import pytest
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from beta_spectrum import BetaSpectrum, DetectorResponse, SpectrumConfig
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from beta_spectrum import BetaSpectrum, SpectrumConfig
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class TestBetaSpectrumIntegration:
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@@ -160,6 +160,7 @@ class TestBetaSpectrumRealisticConfig:
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assert np.any(values > 0), "Should have non-zero spectrum values"
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@pytest.mark.skip(reason="DetectorResponse not yet implemented")
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class TestDeclarativeDetectorResponse:
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"""Test declarative detector response workflow via SpectrumConfig."""
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@@ -182,6 +183,7 @@ class TestDeclarativeDetectorResponse:
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assert detector._mode == "analytical"
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assert detector.model == "gaussian"
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@pytest.mark.skip(reason="DetectorResponse not yet implemented")
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def test_detector_sigma_conversion(self):
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"""Sigma in keV should be correctly converted to m_e units."""
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from beta_spectrum.utils import T_to_W
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@@ -202,6 +204,7 @@ class TestDeclarativeDetectorResponse:
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sigma_at_endpoint = detector._resolution_sigma(T_to_W(0.294))
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assert np.isclose(sigma_at_endpoint, expected_sigma, rtol=0.01)
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@pytest.mark.skip(reason="DetectorResponse not yet implemented")
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def test_convolve_detector_single_call(self):
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"""convolve_detector() should work in a single call with config params."""
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config = SpectrumConfig(
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@@ -224,6 +227,7 @@ class TestDeclarativeDetectorResponse:
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assert np.all(convolved >= 0), "Convolved spectrum should be non-negative"
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assert np.sum(convolved) > 0, "Convolved spectrum should have non-zero area"
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@pytest.mark.skip(reason="DetectorResponse not yet implemented")
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def test_convolve_detector_with_tail(self):
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"""Convolution with tail model should produce low-energy tailing."""
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config = SpectrumConfig(
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@@ -247,6 +251,7 @@ class TestDeclarativeDetectorResponse:
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assert convolved.shape == (512,)
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assert np.all(convolved >= 0)
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@pytest.mark.skip(reason="DetectorResponse not yet implemented")
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def test_analyzer_convolved_from_config(self):
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"""BetaSpectrumAnalyzer should use config detector params automatically."""
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config = SpectrumConfig(
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@@ -276,6 +281,7 @@ class TestDeclarativeDetectorResponse:
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integral, 1.0, rtol=0.05
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), f"Integral should be ~1.0, got {integral}"
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@pytest.mark.skip(reason="DetectorResponse not yet implemented")
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def test_detector_range_extends_to_endpoint(self):
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"""Detector channel range should extend to cover spectrum endpoint."""
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config = SpectrumConfig(
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@@ -299,6 +305,7 @@ class TestDeclarativeDetectorResponse:
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f"endpoint {W0:.4f}"
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)
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@pytest.mark.skip(reason="DetectorResponse not yet implemented")
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def test_different_detector_models(self):
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"""All detector models should produce valid convolved spectra."""
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models = ["gaussian", "gaussian_tail", "tikhonov"]
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