feat: experimental data calibration pipeline with ROOT I/O

- Fix chi2 calculation bug in calibration.py (remove incorrect
  coeffs[::-1] reversal in np.polyval)
- Fix broken beta_spectrum/cli.py (remove orphaned detector response
  add_argument calls and unused imports)
- Add ExpSpectrum.apply_calibration() and EnergyCalibrator.from_am241_spectrum()
- Add LivetimeDetermination class for pulser-based livetime
- Add SpectrumPipeline orchestration (read→subtract→calibrate→livetime→validate)
- Add ROOT I/O with PyROOT primary + uproot fallback
- Add bs_exp CLI with process, livetime, export subcommands
- Add exp_calibration notebook with pre-calibration visualization
- Add comprehensive tests (73 passing)
- Add bs_exp console script and [root] extra to pyproject.toml
- Remove obsolete detector_response module and unused notebooks
This commit is contained in:
2026-05-21 16:01:25 +03:00
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commit 5c2b12c0e6
27 changed files with 3065 additions and 773 deletions
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"""Unit tests for the LivetimeDetermination class."""
from __future__ import annotations
import numpy as np
import pytest
from exp_data.spectrum import ExpSpectrum
from exp_data.livetime import LivetimeDetermination, LivetimeResult
class TestLivetimeResult:
def test_basic(self):
result = LivetimeResult(
live_time_fraction=0.95,
real_time_sec=3600.0,
pulser_frequency_hz=100.0,
observed_pulser_rate=95.0,
pulser_peak_center_keV=10.0,
pulser_peak_sigma_keV=0.5,
pulser_peak_chi2=1.2,
)
assert result.live_time_fraction == 0.95
assert result.metadata == {}
def test_metadata_populated(self):
result = LivetimeResult(
live_time_fraction=0.95,
real_time_sec=3600.0,
pulser_frequency_hz=100.0,
observed_pulser_rate=95.0,
pulser_peak_center_keV=10.0,
pulser_peak_sigma_keV=0.5,
pulser_peak_chi2=1.2,
metadata={"pulser_peak_channel": 100, "pulser_fit_success": True},
)
assert result.metadata["pulser_peak_channel"] == 100
class TestLivetimeDetermination:
def test_from_file_requires_positive_frequency(self):
"""Test that zero frequency raises ValueError."""
n_channels = 4096
energies = np.arange(n_channels, dtype=np.float64)
counts = np.ones(n_channels) * 10
spectrum = ExpSpectrum(energies=energies, counts=counts)
determiner = LivetimeDetermination(
spectrum,
pulser_frequency_hz=0.0,
real_time_sec=3600.0,
)
with pytest.raises(ValueError, match="positive"):
determiner.run()
def test_live_time_clamped_to_1(self):
"""Test that live-time fraction > 1.0 is clamped to 1.0."""
n_channels = 4096
energies = np.arange(n_channels, dtype=np.float64)
counts = np.exp(-energies / 500) * 10 # background
# Add prominent pulser peak at channel 100
pulser_channel = 100
pulser_peak = 500 * np.exp(-0.5 * ((energies - pulser_channel) / 2.0) ** 2)
counts += pulser_peak.astype(float)
spectrum = ExpSpectrum(energies=energies, counts=counts)
determiner = LivetimeDetermination(
spectrum,
pulser_frequency_hz=10.0, # low frequency -> observed rate > frequency
real_time_sec=0.01, # very short time -> high observed rate
)
result = determiner.run()
assert result.live_time_fraction == 1.0
def test_live_time_clamped_to_0(self):
"""Test that live-time fraction < 0 is clamped to 0."""
n_channels = 4096
energies = np.arange(n_channels, dtype=np.float64)
counts = np.exp(-energies / 500) * 10 # background only, no pulser peak
spectrum = ExpSpectrum(energies=energies, counts=counts)
determiner = LivetimeDetermination(
spectrum,
pulser_frequency_hz=100.0,
real_time_sec=3600.0,
)
result = determiner.run()
# With no pulser peak, the fitter may find a tiny spurious peak
# but the observed rate will be negligible -> live_time ~ 0
assert result.live_time_fraction >= 0.0
assert result.live_time_fraction <= 0.01
def test_pulser_peak_detection(self):
"""Test that LivetimeDetermination correctly identifies a pulser peak."""
n_channels = 4096
energies = np.arange(n_channels, dtype=np.float64)
counts = np.exp(-energies / 500) * 10 # background
# Add pulser peak at channel 100 (10 keV)
pulser_channel = 100
pulser_peak = 500 * np.exp(-0.5 * ((energies - pulser_channel) / 2.0) ** 2)
counts += pulser_peak.astype(float)
spectrum = ExpSpectrum(
energies=energies,
counts=counts,
source="pulser",
)
determiner = LivetimeDetermination(
spectrum,
pulser_frequency_hz=100.0,
real_time_sec=3600.0,
)
result = determiner.run()
assert result.live_time_fraction > 0
assert result.live_time_fraction <= 1.0
assert result.pulser_peak_center_keV == pytest.approx(pulser_channel, abs=5.0)
def test_result_contains_pulser_info(self):
"""Test that result contains pulser peak info."""
n_channels = 4096
energies = np.arange(n_channels, dtype=np.float64)
counts = np.exp(-energies / 500) * 10
pulser_channel = 100
pulser_peak = 500 * np.exp(-0.5 * ((energies - pulser_channel) / 2.0) ** 2)
counts += pulser_peak.astype(float)
spectrum = ExpSpectrum(energies=energies, counts=counts, source="pulser")
determiner = LivetimeDetermination(
spectrum,
pulser_frequency_hz=100.0,
real_time_sec=3600.0,
)
result = determiner.run()
assert result.pulser_peak_center_keV > 0
assert result.pulser_peak_sigma_keV > 0
assert result.pulser_peak_chi2 > 0
assert result.pulser_frequency_hz == 100.0
assert result.real_time_sec == 3600.0