feat: experimental data calibration pipeline with ROOT I/O
- Fix chi2 calculation bug in calibration.py (remove incorrect coeffs[::-1] reversal in np.polyval) - Fix broken beta_spectrum/cli.py (remove orphaned detector response add_argument calls and unused imports) - Add ExpSpectrum.apply_calibration() and EnergyCalibrator.from_am241_spectrum() - Add LivetimeDetermination class for pulser-based livetime - Add SpectrumPipeline orchestration (read→subtract→calibrate→livetime→validate) - Add ROOT I/O with PyROOT primary + uproot fallback - Add bs_exp CLI with process, livetime, export subcommands - Add exp_calibration notebook with pre-calibration visualization - Add comprehensive tests (73 passing) - Add bs_exp console script and [root] extra to pyproject.toml - Remove obsolete detector_response module and unused notebooks
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@@ -163,14 +163,16 @@ def calibrate_from_am241(
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filepath = Path(filepath)
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with open(filepath, "rb") as f:
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f.read(128) # skip header
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counts = np.array(struct.unpack(f"{n_channels}i", f.read(n_channels * 4)), dtype=np.int64)
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counts = np.array(
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struct.unpack(f"{n_channels}i", f.read(n_channels * 4)), dtype=np.int64
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)
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# Search for peaks in low-energy region only
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counts_low = counts.copy()
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counts_low[300:] = 0
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peaks, props = find_peaks(counts_low, height=10, distance=10)
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peak_energies = np.array(peaks, dtype=float)
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peak_heights = props["peak_heights"]
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_peak_heights = props["peak_heights"] # noqa: F841
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# Known Am-241 gamma lines (keV)
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am241_lines = {13.8: None, 17.8: None, 26.3: None}
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@@ -221,7 +223,7 @@ def read_am241_calibration(
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# Am-241 known peaks (keV): 13.8, 17.8, 26.3, 59.54
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# The spectrum typically has a few prominent peaks
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with open(filepath, "rb") as f:
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header = f.read(128)
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_header = f.read(128)
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counts_raw = struct.unpack(f"{n_channels}i", f.read(n_channels * 4))
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counts = np.array(counts_raw, dtype=np.float64)
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