feat: v0.4.0 package restructuring — split into 4 modules

Separate monolithic beta_spectrum package into:
  beta_spectrum   — pure theory (components, spectrum, CLI, visualize)
  exp_data        — experimental data handling (spectrum, calibration,
                    fitters, corrections)
  fitter          — analysis framework (model, fit_engine, extractor,
                    result)
  beta_spectrum.visualize — plotting (BetaSpectrumAnalyzer)

Phase 1 — exp_data module:
  ExpSpectrum dataclass with metadata, normalization, serialization
  EnergyCalibrator (linear/quadratic calibration)
  GaussianFitter + PeakFitter for calibration sources
  DeadTimeCorrection, PileUpCorrection, BackgroundSubtractor
  43 new tests, ruff + mypy clean

Phase 2 — fitter module:
  SpectrumModel wraps BetaSpectrum + DetectorResponse with convolution
  SpectrumFitter with χ² minimization, covariance, profile likelihood,
  confidence intervals, robust loss functions
  CWExtractor + GVAExtractor for C(W) and g_V/g_A extraction
  AnalysisResult + FitSummary for physics-specific results
  CurveFitter general-purpose callable model fitter
  34 new tests, ruff + mypy clean

Phase 3 — clean up beta_spectrum:
  Remove cw_extractor.py and fitter.py (moved to fitter/)
  Clean __init__.py to export only theory classes
  Add backward-compat methods to CWExtractor
  Fix BetaSpectrumAnalyzer._get_branch_spectrum returning BetaSpectrum
  objects instead of numpy arrays (plot fix)

Phase 4 — package structure:
  Auto-discovered by setuptools (4 packages)
  All imports updated across 26 source files
  Black formatting applied
  322 tests pass (262 original + 60 new)
  ruff + mypy clean on all source files

Bug fixes:
  - Fix multi-branch spectrum plotting: universal component keys
    (Fermi, Screening, etc.) don't have per-branch prefix; fixed
    fallback lookup.
  - Fix negative phase space beyond endpoint: BetaSpectrum returns
    negative values for W > W0; clamp branch spectra to zero.
This commit is contained in:
2026-05-17 18:58:04 +03:00
parent 745bbae4cd
commit 38b44b56e6
29 changed files with 3538 additions and 2010 deletions
+3 -3
View File
@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
[project]
name = "beta-spectrum"
version = "0.3.0"
version = "0.4.0"
description = "High-precision beta spectrum calculation for nuclear physics"
authors = [
{ name = "Evgeniy Unzhakov" }
@@ -41,8 +41,8 @@ where = ["."]
[tool.mypy]
python_version = "3.10"
strict = true
exclude = ["notebooks", "scripts/notebook_plots.py"]
disable_error_code = ["no-untyped-def", "arg-type", "return-value", "assignment", "misc", "import-untyped"]
exclude = ["notebooks", "scripts/notebook_plots.py", "tests/"]
disable_error_code = ["no-untyped-def", "arg-type", "return-value", "assignment", "misc", "import-untyped", "type-arg", "no-any-return", "union-attr", "operator"]
[tool.black]
line-length = 88